New release
  CMP v2.1.0-beta

  •  •Preprocessing: Motion and eddy current correction
  •  •Custom atlases
  •  •New reconstuction schemes: CSD, ballstick, multitensor...
  •  •Probabilistic tractography: Camino, MRtrix, FSL probtrackx
  •  •Global tractography: Gibbs-tracker

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Connectome Mapper

Connectome Mapper implements a full diffusion MRI processing pipeline, from raw Diffusion/T1/T2 data to multi-resolution connection matrices. The Connectome Mapper also offer support for resting-state fMRI data processing. The Connectome Mapper is part of the Connectome Mapping Toolkit.


Copyright (C) 2009-2014, Ecole Polytechnique Fédérale de Lausanne (EPFL) and Hospital Center and University of Lausanne (UNIL-CHUV), Switzerland

This software is distributed under the open-source license Modified BSD.


If you use the Connectome Mapper in your research, please cite:

A. Daducci, S. Gerhard, A. Griffa, A. Lemkaddem, L. Cammoun, X. Gigandet, R. Meuli, P. Hagmann and J.-P. Thiran
The Connectome Mapper: An Open-Source Processing Pipeline to Map Connectomes with MRI
Plos One 7(12):e48121 (2012)

Link to manuscript