connectome0001 - tp1Download CFF |
An exemplary output of a Diffusion Spectrum Imaging dataset processed by the Connectome Mapper. The raw data is here. |
Human cortex connectivity datasetDownload CFF |
Reference: Hagmann P, Cammoun L, Gigandet X, Meuli R, Honey CJ, et al. 2008 Mapping the Structural Core of Human Cerebral Cortex. PLoS Biol 6(7): e159. doi:10.1371/journal.pbio.0060159 |
Connection matrices and anatomical labels for areas of the human cerebral cortex. These data were generated by DSI (diffusion spectrum imaging) of 5 participants. Participant A was scanned twice. Note that these connection matrices are weighted and symmetric (undirected). |
Single subject connectivityDownload CFF |
This file contains connectivity data for a single subject as done with the Connectome Mapping Toolbox developed at EPFL. |
Freesurfer Atlas with Average ConnectivityDownload CFF |
This atlas is also known as the 'Desikan-Killiany' cortical atlas. It is a gyral based atlas: ie, a gyrus was defined as running between the bottoms of two adjacent sulci. That is, a gyrus includes the part visible on the pial view + adjacent banks of the sulci limiting this gyrus. The atlas is enriched by an avarage connectivity dataset: Parameters: DSI 258 diffusion gradients over a hemisphere with bmax=8000 s/mm2 Voxel size 2.2 x 2.2 x 3 mm3 Data processed according to Hagmann P, Cammoun L, Gigandet X, Meuli R, Honey CJ, et al. 2008 Mapping the Structural Core of Human Cerebral Cortex. PLoS Biol 6(7): e159. doi:10.1371journal.pbio.0060159 20 healthy subjects aged between 22 and 33 years, males and females |
Macaque connectivity Right HemisphereDownload CFF |
Hagmann P, Cammoun L, Gigandet X, Meuli R, Honey CJ, et al. 2008 Mapping the Structural Core of Human Cerebral Cortex. PLoS Biol 6(7): e159. doi:10.1371/journal.pbio.0060159 |
The macaque dataset used for the study. See references. |
C.elegans connectivityDownload CFF |
C. elegans global network of 277 neurons and 131 frontal neurons. The files include the matrix, labels of the neurons, and the spatial positions of the neurons as two-dimensional coordinates (unit is mm). http://www.wormatlas.org |
2 Functional Connectome (fMRI) datasetsDownload CFF |
This Connectome File exposes data from two subjects from the Baltimore Dataset of the 1000 Functional Connectomes Project. Metadata, anatomical and functional MRI data is included. |
pbc2009icdm brain 1Download CFF |
For more information, seeCompetition: PBC BCC Fall 2009, IEEE ICDM |
SRI24 Atlas - Normal Adult Brain AnatomyDownload CFF |
SRI24 is an MRI-based atlas of normal adult human brain anatomy, generated by
template-free nonrigid registration from images of 24 normal control subjects. The atlas comprises the following channels of information: T1 (T1.nii.gz), T2 (T2.nii.gz), and proton density-weighted (PD.nii.gz) structural MRI, their unstripped coutnerparts, tissue probability maps (GM, WM, CSF), maximum-likelihood tissue segmentation, DTI-based measures (FA, MD, longitudinal ("l1") and transversal ("lt") diffusivity), and two parcellation maps for with cortical regions and subcortical structures. The atlas is provided at 1mm isotropic image resolution and is based on 3T MR data. http://www.nitrc.org/projects/sri24/ |
fsaverage surfacesDownload CFF |
For more information, seehttp://surfer.nmr.mgh.harvard.edu/fswiki/FsAverage |
SPL-PNL Brain AtlasDownload CFF |
The initial version of the SPL-PNL Brain Atlas was developed by the Surgical Planning Laboratory in collaboration with the Harvard Neuroscience Laboratory at Brockton VA Medical Center. Dr. Martha Shenton, one of the original people involved with the Harvard Neuroscience Laboratory, is now the Director of the Psychiatry Neuroimaging Laboratory (PNL), Department of Psychiatry, Brigham and Women's Hospital, Harvard Medical School. The atlas was derived from a volumetric T1-weighted MR-scan of a healthy volunteer, using semi-automated image segmentation and three-dimensional reconstruction techniques. Over the years, the original atlas has undergone several revisions. The current version consists of: 1. the original volumetric whole brain MRI of a healthy volunteer; 2. a set of detailed label maps; 3. 160+ three-dimensional models of the labeled anatomical structures; The SPL-PNL Brain Atlas provides important reference information for surgical planning. It has been used for template-driven segmentation and also as a powerful neuroanatomy teaching tool. We are pleased to make this brain atlas available to our colleagues for free download. Please note that the data is being distributed under the Slicer license. By downloading these data, you agree to acknowledge our contribution in any of your publications that result form the use of this atlas. Please acknowledge the following grants: P41 RR13218, R01 MH050740. |
Example datasetDownload CFF |
This file contains a show of the multi-modal files hostable by this format. |